Fencer: Yes, that's why I suggested two things: 1) an option which approach to take when creatin the tournament, and 2) if you have a tournament where you play each person twice, you play the same board twice against that player. If it's a position that favours one side, you play once with that side, and once against that side.

But as I said, it's just my preference - I won't get upset if things stay as they are.